FastQCFastQC Report
Fri 17 Mar 2023
EGAF00001427090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001427090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149771313
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGCCAGCTGTTAGGGCCGCAGCAAAGGCGCTGCGCTGCCCCCCTCTG146175989.759945150510898No Hit
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACT145278159.699998423596647No Hit
TGATTCACTGATTCCTCACCCATGCACCATTCACCAGGTTTCAGTTCACC98831146.5988030698509No Hit
TGATTCACTGATTCCTCACCCATGGGTTTGTTTCTCATTTTTCCTGAATC76407005.101577763426565No Hit
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACTTACAGGAAAACATGGCACTAGTGC69810094.661112238496567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15677491.0467618722151417No Hit
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACTTACAGGAAAACATGATCCCCTGAC9127950.6094591692602709No Hit
TGATTCACTGATTCCTCACCCATGGGTTTGTTTCTCATTTTTCCTGAATCTGATAGTTTATTTTTTGTTCTTGAT6016420.40170710127913484No Hit
CATTGCCAGCTGTTAGGGCCGCAGCAAAGGCGCTGCGCTGCCCCCCTCTGGCTCTGCTGCCTTTCCCATGCCTGT3602960.2405640925375342No Hit
TGATTCACTGATTCCTAACCCATGCACCATTCACCAGGTTTCAGTTCACC2223650.1484696872491196No Hit
TGATTCACTGATTCCTCTCCCATGCACCATTCACCAGGTTTCAGTTCACC1921860.12831963354691295No Hit
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACTTACAGGAAAACATGCCTGTAATCCC1737140.11598616351851038No Hit
ATTTCTTCAACTTGCTGAGCTCACACCATTTGCAAAAGAAGCTTTGTACTTACAGGAAAACATGGATCCCCTGAC1575220.10517501439010553No Hit
TGATTCACTGATTCCTAACCCATGGGTTTGTTTCTCATTTTTCCTGAATC1527450.10198548503076821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)