FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001432545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001432545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27107433
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCAGCGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15001175.533969225341256No Hit
TGCATCAGCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8540133.1504753696154117No Hit
TGCATCAGCGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5980782.206324737572901No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1227490.4528241386781257TruSeq Adapter, Index 13 (97% over 37bp)
TGCATCAGCGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC281050.10368004967493602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)