FastQCFastQC Report
Wed 22 Feb 2023
EGAF00001432558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001432558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37930908
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAGTCATGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15501044.08665144530682No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC13309563.5088957005722086Illumina Single End PCR Primer 1 (96% over 31bp)
TAAAGTCATGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11467783.023333899626131No Hit
TAAAGTCATGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC2492220.6570420091182632No Hit
TAAAGTCATGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC2033000.5359745145041084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)