FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001432565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001432565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31506496
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT6940112.2027552667234085No Hit
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4254841.350464361381221No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG3196661.0146034646315476TruSeq Adapter, Index 6 (97% over 35bp)
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC2369090.7519369973734941No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAAACTCGTATG327000.10378812039269615TruSeq Adapter, Index 6 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)