FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001432566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001432566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31506496
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT6485812.0585627801961857No Hit
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4120441.3078064917152323No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC3709391.1773413330381137Illumina Single End PCR Primer 1 (96% over 33bp)
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1892010.6005142558537769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)