FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001432577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001432577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38334803
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGCGAACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT6701601.7481764546957501No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG4075951.0632505402466788TruSeq Adapter, Index 27 (97% over 38bp)
CATCAGCGAACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA3932841.0259189280299679No Hit
CATCAGCGAACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC2298190.5995048415926384No Hit
CATCAGCGAACGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC519540.13552697792655932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)