FastQCFastQC Report
Mon 3 Apr 2023
EGAF00001433555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001433555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53863460
Sequences flagged as poor quality0
Sequence length100
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCAAATCCAATCGAATCCTTGTAGCACTTTACAAAATACGACAACCTT1208100.2242893419769172No Hit
CAGCAAATCCAATCGAATCACAGTGGCACTTTACGAAATACGACAACCTT689280.12796801393746338No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)