FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001433563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001433563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49227692
Sequences flagged as poor quality0
Sequence length100
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCAAATCCAATCGAATCCTTGTAGCACTTTACAAAATACGACAACCTT1101290.2237135147428809No Hit
CAGCAAATCCAATCGAATCACAGTGGCACTTTACGAAATACGACAACCTT632230.12842974641183666No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)