FastQCFastQC Report
Mon 23 Jan 2023
EGAF00001552039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001552039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences218489541
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC2832430.12963686897946297No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC2673490.12236237889300156No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT2489600.1139459577152025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)