FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001552086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001552086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62430828
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1110820.17792812230521754No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG819460.13125887101801695No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT687890.11018434674612997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)