FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001552104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001552104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62372808
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG928550.1488709631286762No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT886280.14209397146269254No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT829170.13293773786807866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)