FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001552110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001552110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59439838
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1085480.18261826352891472No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT852510.14342401135077118No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG686440.11548483695396343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)