FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001552118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001552118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62572006
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1391910.2224493170316451No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG951100.15200088039370194No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC638740.10208079312656207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)