FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001561154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001561154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25523857
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATGAAGACAAGTCCTCCACCTAAACCATGTCCTCCATCCAAACCATGT2532160.9920757666053371No Hit
GATATCTGGGTAGTAACGGGATACTAGGTAGTGGTTTGGGTGGAGAATAG2028960.7949268795856362No Hit
GATATCACACAACCACTCAACCCATTTCCCCTACCTAAACCATGCCCGCC1324590.518961534692817No Hit
CAATGGTCTCCACCTAAACCGTGTTCTCCACCCAAACCGTGTCGTCCACC1004090.3933927384094026No Hit
TGGTCTCGAGGTGGAGGACATGGTTTGGGTGGCGGGCATGGCTTGGGTGG817720.3203747772133342No Hit
TTGAAGACAGGGACATGGTTTAGGTGGAGGACATGGTTTAGGTGGAGGAC469150.1838084267593256No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)