FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001561573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001561573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39456947
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTCCATATTATAATATTGTTTAAAACTATTTTTAAACACATTAAAAA622010.1576427086464647No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC592010.15003948480859403Illumina Single End PCR Primer 1 (100% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG562620.14259085985542672Illumina Single End PCR Primer 1 (100% over 50bp)
ACACTCTTTCCCTACACGACGCTCTTCCGATCTGAAGAGCGTCGTGTAGG469720.11904621003748718Illumina Single End PCR Primer 1 (100% over 33bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)