FastQCFastQC Report
Sun 5 May 2024
EGAF00001579328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001579328
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences43923285
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1837620.41837034729984335No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1276760.2906795336459921No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1098640.2501270112196754No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT664710.151334309353228No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT590520.13444349620025003No Hit
AAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACC479360.10913573518009866No Hit
TGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCT470690.10716183910197064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)