FastQCFastQC Report
Wed 29 Mar 2023
EGAF00001579338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001579338
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences59886699
Sequences flagged as poor quality0
Sequence length90
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT792210.13228480000208395No Hit
CGTGAACCTGGGACCACCAGTAGCCATCTTGTTTGCCACATGGAGAGAGA701750.11717960944883604No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC693760.11584542337189098No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC635710.10615211902061926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)