FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001579339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001579339
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences56642919
Sequences flagged as poor quality0
Sequence length90
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC3550350.6267950279892884TruSeq Adapter, Index 7 (100% over 50bp)
GGGCTTTATTGGCTTATAGACCTGGGCAGTCCAGGTGTAGATCTGGTTCC2532060.447021453820203No Hit
GGCTTTATTGGCTTATAGACCTGGGCAGTCCAGGTGTAGATCTGGTTCCA1464790.2586007264208965No Hit
GTGGGATTCACCACTTTTCCCATGAAGAGGGGAGACTTGGTATTTTGTTC1347340.23786556621490498No Hit
GGGGGATAGACATGGGTATGGCCTCTAAAAACATGGCCCCAGCAGCTTCA1327770.23441058890344263No Hit
CCCCCGAGCATGGAAGTATTTGTCTGAGCCGATGTAATTGGCTTCTCTCA1016760.17950346097099973No Hit
GGCGTAATGGAATGCTTGAAGGCTGCTCCGTGATGTCGGTCGGAGCTTCC988270.1744737060602403No Hit
GGGTGATCTTGTTGAAGGTTGGGTGATCCTGATCATGGTGGGATGTATCT873710.15424875967285512No Hit
CCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAG834340.1472981997979306No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC826470.14590879400124135No Hit
CGGGGCTAAGGGACCTTTATTGGGCTGGGGGAAGGAGATGGGAGGAGGGA811780.14331535421047067No Hit
GGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTAGTGCATGGCT765080.1350707226087695No Hit
GTGCTGTTGGACTGGTGTGCCAGCTGGCGGTATAGGCTGAAGGCGAACTC752410.13283390285730154No Hit
GGTGAGTTCATTTTCCAGGTGCTGTAGTTTCCCCTCATCAGGCAGGAAGA739990.13064121924931163No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG709680.12529015321403192No Hit
GGGGGGATAGACATGGGTATGGCCTCTAAAAACATGGCCCCAGCAGCTTC694180.12255371231839234No Hit
GGGGGAATGGGGGTGTGGTCAGTTGGGGCACCCAAAGACAACCATGCTCT656540.11590857455633598No Hit
CCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGA639570.11291261313704543No Hit
CGGGGGGGATAGACATGGGTATGGCCTCTAAAAACATGGCCCCAGCAGCT626470.11059987921879522No Hit
GGGGCTTTATTGGCTTATAGACCTGGGCAGTCCAGGTGTAGATCTGGTTC588670.10392649432491288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)