FastQCFastQC Report
Thu 16 May 2024
EGAF00001590154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001590154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73636459
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2231780.3030808420595021Illumina Single End PCR Primer 1 (100% over 50bp)
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1304570.17716359772269877No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG773770.10507974045845958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)