FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001590159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001590159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74550341
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA2201240.2952689378040538Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)