FastQCFastQC Report
Tue 14 May 2024
EGAF00001590160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001590160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74550341
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2480810.33276977230727894Illumina Single End PCR Primer 1 (100% over 50bp)
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1161300.15577393536000056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)