FastQCFastQC Report
Mon 6 May 2024
EGAF00001591536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18705416
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATT325380.17394961972511064No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT278120.14868420996357418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)