FastQCFastQC Report
Sun 5 May 2024
EGAF00001591552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20896562
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG998140.47765752088788577No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA879960.4211027632200933No Hit
GGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCC270280.12934185058767084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)