FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001591606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18026821
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC583440.32365107525059467No Hit
CTCTCTACAAGGTTTTTTCCTAGTGTCCAAAGAGCTGTTCCTCTTTGGAC329880.1829939954471174No Hit
ATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTT204900.11366396770678534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)