FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001591632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16251381
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA412270.2536830562276523No Hit
CTTGGCTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC273890.16853336956410042No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC185210.1139656992842639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)