FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001591700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15299534
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAA403710.263870781946692No Hit
GTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTCTTAG390270.25508620066467386No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC341750.22337281645310242No Hit
CTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATTACT263470.17220785940277658No Hit
AGGAATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTC222150.1452005008780006No Hit
GTCTGGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTA202430.1323112194136109No Hit
GTTTAGGACCTGTGGGTCTGTTAGGTATTGTTTGCATTAATAAATTAAAG160300.10477443299907042No Hit
CGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAA160220.1047221438247727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)