FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001591714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17913984
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC478430.26707068623037733No Hit
CTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAA321980.17973667945667474No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG284530.1588312236965267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)