FastQCFastQC Report
Wed 1 May 2024
EGAF00001591754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40570312
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length32-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCTTTTAGGCCTACTATGGGTGTTAAATTTTTTACTCTCTCTACAAG1170590.28853364499637074No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC805290.19849243456643864No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT595860.14687094346230317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)