FastQCFastQC Report
Fri 10 May 2024
EGAF00001591846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001591846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18107451
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA350710.1936827000111722No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTAAATTTTTTACTCTCTCTACAAG282840.15620089210789526No Hit
CTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAA237360.13108415977489046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)