FastQCFastQC Report
Fri 10 May 2024
EGAF00001592084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001592084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15620376
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC681790.43647476859711953No Hit
GATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATT417140.2670486293031615No Hit
AGGAATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTC195590.12521465552429725No Hit
GATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTT172570.11047749426774361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)