FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001592091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001592091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31566039
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCAGCACCATCTCGTAT1721980.5455166547820587TruSeq Adapter, Index 5 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1529250.48446053050875343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)