FastQCFastQC Report
Tue 14 Feb 2023
EGAF00001595215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001595215
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences136895180
Sequences flagged as poor quality0
Sequence length50
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4982800.3639865187364522No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4812240.35152735107255056No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4675270.34152188557697943No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4201690.30692753389856386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)