FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001595217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001595217
File typeColorspace converted to bases
EncodingSanger / Illumina 1.9
Total Sequences94206229
Sequences flagged as poor quality0
Sequence length50
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3354520.35608261105536876No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3303150.3506296807613433No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3114600.3306150806652074No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2922850.31026080027043645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)