FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001595836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001595836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22746827
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC10724124.714556452203202No Hit
GCCATA10710744.708674313125079No Hit
TTCCAT8140393.5786925358864337No Hit
AAGCAT6775012.978441784429978No Hit
TTCTGT6447622.8345140181529493No Hit
TAGCTT6234292.740729509219022No Hit
GATCCT6232932.7401316236326063No Hit
ACAGTG6054522.6616987063734205No Hit
GACTTG6034612.6529458372369916No Hit
ATGTGA5909212.5978172691953914No Hit
ATCAGC5613242.4677024184515934No Hit
TAAGTC5586432.4559161592076117No Hit
CTTGTA5282362.3222403722506No Hit
CGAAGC4814282.116462221302338No Hit
TATTGG4669802.0529456701807245No Hit
GAACCG4649762.0441356502161816No Hit
GCTCAA4300751.8907032616021568No Hit
AGGTCA4286701.884526575948373No Hit
ACAAGT4230481.8598110408981436No Hit
TGACCA4200931.8468202180462356No Hit
TCGGAC4044661.7781205264365003No Hit
GTCTGC4017491.7661760033608205No Hit
CGATGT3951951.7373631935566223No Hit
CGACAA3947881.7355739330149211No Hit
ACTAAT3700751.6269302087715356No Hit
GCGCAG3426351.506297999276998No Hit
ACTTGA3253751.4304192844127226No Hit
GCCAAT3175761.3961331837622892No Hit
AGTGCA3161241.389749875883788No Hit
CAGTCC3010451.3234593114899058No Hit
TACGAA2600991.1434517878031956No Hit
ATACCT2537981.115751221038433No Hit
ATTGAA2536511.1151049770589982No Hit
TGCGAC2366701.0404528068903853No Hit
TCAAGC2362791.038733885829439No Hit
TATAAG2167870.9530428133998646No Hit
GAGCCA2005530.8816746177389928No Hit
AGAACG1999490.879019302340498No Hit
GGCAGG1967400.8649118402316068No Hit
CTACCG1955840.8598298127470702No Hit
TGATAA1928880.8479776102398809No Hit
CCGGAA1825740.8026350224582972No Hit
CTAGTT1783630.7841225503671347No Hit
GCGTAT1679950.7385425668380033No Hit
TTAGGC1568680.6896258541905647No Hit
CAGATC1370520.6025104072757048No Hit
CCGTCG1289620.5669450073190428No Hit
TGACAC1264280.5558049920544962No Hit
TCTTCA1256330.5523099991044905No Hit
CCAGCG1215800.5344921293857819No Hit
CTGTAT1041590.4579056234964111No Hit
GCGGCT893850.3929559054544179No Hit
ATTCAT855950.376294240950617No Hit
CGAGAG844390.37121221346608035No Hit
CTATTA832680.3660642427183361No Hit
CTATGC797850.3507522170015185No Hit
TGGCAT677340.29777339934048824No Hit
GATCAG665840.29271774916123466No Hit
TTCACA660590.2904097349489667No Hit
TAATGA638080.2805138492502713No Hit
GACCAT635120.27921256885630685No Hit
CGTACT597390.26262564005080796No Hit
AGTTAG558980.24573976845210102No Hit
GGATCG521750.229372650523961No Hit
GGCCGT515710.22671733512546607No Hit
TCATGT478960.2105612356395905No Hit
GACTAA384100.1688587159870693No Hit
ATCCAT253980.11165513326320195No Hit
AATCAT233890.1028231322109233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)