FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001603803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001603803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1467376
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44540.30353501760966517No Hit
CTCTACTTGTGCGCTATCGGTCTCTCGCCAATATTTAGCTTTAGAAGAAA39550.26952873701082747No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26510.18066262498500724No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21100.14379409231171833No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA19700.13425325206354743No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA17100.1165345487455158No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG16780.11435378526021961No Hit
ATTTAGAGCTGCATTCCCAAACAACTCGACTCGTCGAAGGAGCTTTACAT16650.11346785009431802No Hit
TTCCCAAACAACTCGACTCGTCGAAGGAGCTTTACATAGGTTAACATTTC16470.1122411706338389No Hit
GTTCTAAGTTGGTTGTTAAGCGTACGCCGGACGGCCGAAGCCTGCCAAGG14900.10154179978410442No Hit
TTACATAGGTTAACATTTCCAGTCACATACGGGATTCTCACCCTCTATGA14810.10092846005386485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)