FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001603804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001603804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1467376
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTACTTGTGCGCTATCGGTCTCTCGCCAATATTTAGCTTTAGAAGAAA38850.264758316886742No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA19720.13438954978137846No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG16970.11564861357961423No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA16710.11387674324781105No Hit
ATTTAGAGCTGCATTCCCAAACAACTCGACTCGTCGAAGGAGCTTTACAT16300.11108264003227529No Hit
TTCCCAAACAACTCGACTCGTCGAAGGAGCTTTACATAGGTTAACATTTC15980.10890187654697911No Hit
GTTCTAAGTTGGTTGTTAAGCGTACGCCGGACGGCCGAAGCCTGCCAAGG15790.10760704822758449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)