FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001604368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001604368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2731234
Sequences flagged as poor quality0
Sequence length151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA32420.11870092419763373No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG30440.11145145381172028No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT27600.10105322356121813No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)