FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001604792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001604792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2518836
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC38140.15141914757451458No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36210.14375687817706273No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA36060.14316136501145768No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA35000.1389530719745152No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC33270.13208482013120346No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC29410.11676028133629979No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC26280.10433390661400742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)