FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001605339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001605339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2285365
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG28830.12615052737746488No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA26000.11376738507853232No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25600.11201711761578566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)