FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001605570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001605570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1540856
Sequences flagged as poor quality0
Sequence length151
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG25210.16361035684061329No Hit
ATGTAGATAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGATAAGGA23240.1508252555722274No Hit
TATCTACATTGTTCTATCAACTAGAGGCTGTTCACCTTGGAGACCTGCTG22370.1451790433369504No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT20350.1320694471125141No Hit
GTTCTAAGTTGGTCGTTAAGCGCCCGCCGGACGGCCGCAGCCTGCCAAGG18600.12071212365074999No Hit
ACTAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAGTACGACCTG18260.11850555794960724No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC16530.10727803247026328No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT15810.10260530510313748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)