FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001606472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001606472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3203695
Sequences flagged as poor quality0
Sequence length151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA39610.12363848618548269No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG38070.11883153670995522No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT32070.10010316212997804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)