FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001606545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001606545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1486731
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGGA32220.21671707928334044No Hit
TATCTACATTGTTCTATCAACCAGAGGCTGTTCACCTTGGAGACCTGCTG26650.1792523328026388No Hit
CTCTACTTGTGCGCTATCGGTCTCTGGCCGGTATTTAGCTTTAGAAGACA22270.1497917242594659No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT22060.14837922932931377No Hit
ACCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAGTACGACCTG21080.1417875863219372No Hit
CCCTTAGAGCCAATCCTTATCCCGAAGTTACGGATCTATTTTGCCGACTT18660.12551026379351746No Hit
GTCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAATGGCCGGA15740.10586985809806886No Hit
TGATAGAACAATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTC15480.10412105485121384No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTTT15370.10338117655446749No Hit
TTCCCAAACTACTCGACTCGTTGAAGGAGTTTTACAGAGATTTGGCATCC15160.10196868162431537No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)