FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001606546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001606546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1486731
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGGA32070.2157081543332318No Hit
TATCTACATTGTTCTATCAACCAGAGGCTGTTCACCTTGGAGACCTGCTG27060.18201006099960249No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT23670.15920835712714673No Hit
CTCTACTTGTGCGCTATCGGTCTCTGGCCGGTATTTAGCTTTAGAAGACA22980.1545673023566469No Hit
CCCTTAGAGCCAATCCTTATCCCGAAGTTACGGATCTATTTTGCCGACTT20350.13687748489807505No Hit
ACCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAGTACGACCTG20090.13512868165122002No Hit
GTCTATCACCCTGAAATCGGTTTGTCCGGAGCTAGGGTTTAATGGCCGGA16620.11178888447203965No Hit
TTCCCAAACTACTCGACTCGTTGAAGGAGTTTTACAGAGATTTGGCATCC15570.10472640982127904No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTTT15410.1036502232078298No Hit
GTTCTAAGTTGGTTGTTAACCGCACGCCGGACGGCCGAAGCCTGCCAAGG14930.10042166336748208No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)