FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001607021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001607021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1815368
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67540.37204577804610417No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42990.23681148946108999No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33490.1844805020249338No Hit
ACTTAGAGCTGCATTCCCAAACAACTCGACTCTTCGAAAGTATCTTACAA31490.1734634520383746No Hit
AAGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGA31180.17175580929045792No Hit
TCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTTAGTAACGGCGA29000.15974722480510836No Hit
GTACTTGTTCGCTATCGGTCTCTCGTCAATATTTAGCTTTAGAAGGAATT28070.15462429656135837No Hit
GCCTTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGGCC27670.1524208865640465No Hit
TTCCCAAACAACTCGACTCTTCGAAAGTATCTTACAATGAGAATAGATTT25170.13864957408084752No Hit
CTCAAGATACAATCTACAAATTACAACTCGACCTGTTGGCCGATTTCAAA21460.1182129463557802No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG20610.11353070011149255No Hit
ACCTCAGATCAAGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGCG20500.1129247623622318No Hit
CTCTAAGGCGCTGTATTCCAACAGACTTTAATCCGCTCTCAAGATACAAT20290.11176797211364309No Hit
GTATTCCAACAGACTTTAATCCGCTCTCAAGATACAATCTACAAATTACA20100.11072135236491994No Hit
TAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCGGCCAACA19190.10570859462103552No Hit
ATCTTACAATGAGAATAGATTTTACGGGGCTGTCACCCTCTAAGGCGCTG18840.10378061087338766No Hit
GAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCC18200.10025515487768871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)