FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001607808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001607808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1762145
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA20660.11724347315345786No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT18430.10458844192731019No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG18220.10339671252933215No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)