FastQCFastQC Report
Wed 8 May 2024
EGAF00001607990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001607990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2427150
Total Bases366.4 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49060.20213007024699753No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA41660.17164163731124982No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA33830.1393815792184249No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33490.13798075932678244No Hit
AACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAA33490.13798075932678244No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA26710.11004676266402984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)