FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001608117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001608117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2025854
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA25640.12656390835667328No Hit
GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCG22050.10884298671078962No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT20690.10212976848282256No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)