FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001608279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001608279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1405273
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT86640.6165350077885222No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56690.4034091596437133No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38590.27460856360294406No Hit
GAATAGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAAATCG23240.16537711889433585No Hit
ATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGA15340.10916028415830946No Hit
GATTTAGGTCAGCCGCAGTGAATAGGCCCAAGCAACTGTTTATCAAAAAC15230.10837751810502301No Hit
CGTTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTA14830.1055310960930723No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)