FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001608280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001608280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1405273
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAAATCG23570.16772541705419516No Hit
GATTTAGGTCAGCCGCAGTGAATAGGCCCAAGCAACTGTTTATCAAAAAC15210.10823519700442548No Hit
GTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCTTA14480.10304047683261544No Hit
CGTTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTA14080.10019405482066474No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)