FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001608840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001608840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2768680
Sequences flagged as poor quality0
Sequence length151
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA32330.11677044656659491No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG28670.10355115072886718No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT28260.10207030064868458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)